S/N
|
Sample
|
Source
|
Grade
|
Library Preparation
|
Library Selection
|
Library layout
|
Sequencing
Platform
|
Instrument Model
|
Average Mean reads Pair-end length (bp)
|
Reference
|
1. |
Tissue |
UCC |
Ta/T1/T2-4/CIS |
ScriptSeq |
cDNA |
Paired-end |
Illumina |
Illumina HiSeq 2000 |
101 + 7 + 101 |
Hedegaard et al.
(2016) |
2. |
Tissue |
UCC |
N/A |
Ribo-Zero Magnetic Gold Kit (Illumina, USA)
and the NEBNext® Ultra™ RNA Library Prep Ki |
cDNA |
Paired-end |
Illumina |
HiSeqX |
N/A |
Li et al. (2018) |
3. |
Tissue |
UCC |
N/A |
TruSeq Stranded mRNA Lib Prep Kit |
cDNA |
Paired-end |
Illumina |
NextSeq 500 |
72 |
Maeda et al.
(2018) |
4. |
Cell |
Urine |
N/A |
Ovation RNA Seq System V2 kit |
cDNA |
Paired-end/ Single |
Illumina |
Illumina HiSeq 2000 |
N/A |
Sin et al.
(2017) |
5. |
Cell |
N/A |
N/A |
TruSeq Stranded Total RNA kit |
cDNA |
N/A |
Illumina |
Illumina HiSeq 2500 |
N/A |
Shen et al. (2015) |
6. |
Tissue |
N/A |
N/A |
RiboZero rRNA Removal Kit |
cDNA |
N/A |
Illumina |
HiSeq2000 |
N/A |
Li et al. (2017) |
7. |
Tissue |
UCC |
N/A |
TruSeq |
cDNA |
Pair-end |
Illumina |
Genome
Analyzer IIx (GAIIx) |
380 |
Zhang et al (2014) |
8. |
Tissue/cell |
UC |
T1, T2–T4a, N0–3, M0–1 |
DNA/RNA AllPrep kit
(QIAGEN)/ mirVana miRNA isolation kit |
cDNA, miRNA |
N/A |
Illumina |
Illumina HiSeq 2500 |
76 |
Robertson etal (2017) |